PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16422.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 279aa    MW: 31529.6 Da    PI: 8.5616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16422.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll ++++ +G+g+W++ ++t g+ R++k+c++rw +yl
       KHN16422.1 14 RGPWTPREDALLTKYIQAHGKGQWRSLPKTAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP

2Myb_DNA-binding54.13.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eEd+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
       KHN16422.1  67 RGNITPEEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      7999******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.09961IPR017930Myb domain
SuperFamilySSF466894.03E-3011108IPR009057Homeodomain-like
SMARTSM007172.0E-111363IPR001005SANT/Myb domain
PfamPF002495.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-241568IPR009057Homeodomain-like
CDDcd001676.15E-91661No hitNo description
PROSITE profilePS5129427.35762116IPR017930Myb domain
SMARTSM007177.9E-1766114IPR001005SANT/Myb domain
PfamPF002491.6E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2769116IPR009057Homeodomain-like
CDDcd001671.05E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPR EDALLTKYIQ AHGKGQWRSL PKTAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPEEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRNQG  120
TDPNTHDKLT EAPEKKKGRK KNKQKSTENN KGSEKTLVYL PKPIRVKALS SCIPRTDSTL  180
TLDSNSATTA STSQEKVQSP EAETKEVNMV WGVSDNIGDN GGIGIFFGED HDLVNSASYM  240
ECYSDDHDTL EKLYEEYLQL LNVEEKPDEL DSFAQSLLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235820.11e-172MYB transcription factor MYB185
SwissprotQ9SZP13e-68MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A0B2Q9E90.0A0A0B2Q9E9_GLYSO; Transcription repressor MYB4
STRINGGLYMA03G41965.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-69myb domain protein 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]